Rhodococcus opacus PD630

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus PD630 is a Gram-positive, aerobic bacterium characterized by its cocci shape and filamentous cell arrangement. This organism exhibits a mesophilic temperature range, indicating optimal growth at moderate temperatures. It is non-motile, lacking flagella, which suggests a sedentary lifestyle in its habitat. Rhodococcus opacus PD630 is notable for its genetic complexity, possessing ten replicons, which may contribute to its adaptability and metabolic versatility. It features a single membrane structure, characteristic of many bacteria in its class. This organism is free-living, highlighting its independence from host organisms and its capability to thrive in diverse environments. The strain is recognized for its biotechnological potential, particularly in the degradation of organic pollutants and the production of valuable bioproducts, including biofuels. Its ability to utilize a variety of carbon sources makes it an important player in bioremediation efforts and in the broader context of environmental microbiology. In summary, Rhodococcus opacus PD630 represents a significant member of the microbial community with its unique traits that facilitate its survival and utility in various ecological niches. Its adaptability and metabolic capabilities underscore the importance of studying such organisms in understanding microbial roles in ecosystem dynamics and bioremediation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
StrainPD630

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus PD630
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

16413 bp

Thymine Count

18829 bp

Guanine Count

31208 bp

Cytosine Count

31138 bp

Genome Length

97588 bp

Protein-coding Genes

94 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter atp-binding proteinPD630_RS16135Not AvailableNegative3585625 - 358635326269.2
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabPD630_RS16140Not AvailablePositive3586564 - 358808154888.3
hypothetical proteinPD630_RS16145Not AvailablePositive3588078 - 358869822105.6
duf349 domain-containing proteinPD630_RS16150Not AvailableNegative3588705 - 359009050057.9
class iii extradiol dioxygenase subunit b-like domain-containing proteinPD630_RS16155Not AvailablePositive3590294 - 359101024444.9
trna (adenosine(37)-n6)-dimethylallyltransferase miaaPD630_RS16160Not AvailablePositive3590998 - 359193634172.7
rna methyltransferasePD630_RS16165Not AvailablePositive3591933 - 359278130131.0
diaminopimelate epimerasePD630_RS16170Not AvailablePositive3592818 - 359368729740.9
gtpase hflxPD630_RS16175Not AvailablePositive3593746 - 359520052480.5
hypothetical proteinPD630_RS16180Not AvailablePositive3595193 - 359630940062.4

Displaying genes 3391 – 3400 of 8400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.