Rhodococcus opacus PD630

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus PD630 is a Gram-positive, aerobic bacterium characterized by its cocci shape and filamentous cell arrangement. This organism exhibits a mesophilic temperature range, indicating optimal growth at moderate temperatures. It is non-motile, lacking flagella, which suggests a sedentary lifestyle in its habitat. Rhodococcus opacus PD630 is notable for its genetic complexity, possessing ten replicons, which may contribute to its adaptability and metabolic versatility. It features a single membrane structure, characteristic of many bacteria in its class. This organism is free-living, highlighting its independence from host organisms and its capability to thrive in diverse environments. The strain is recognized for its biotechnological potential, particularly in the degradation of organic pollutants and the production of valuable bioproducts, including biofuels. Its ability to utilize a variety of carbon sources makes it an important player in bioremediation efforts and in the broader context of environmental microbiology. In summary, Rhodococcus opacus PD630 represents a significant member of the microbial community with its unique traits that facilitate its survival and utility in various ecological niches. Its adaptability and metabolic capabilities underscore the importance of studying such organisms in understanding microbial roles in ecosystem dynamics and bioremediation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
StrainPD630

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus PD630
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

16413 bp

Thymine Count

18829 bp

Guanine Count

31208 bp

Cytosine Count

31138 bp

Genome Length

97588 bp

Protein-coding Genes

94 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease iiiPD630_RS15205Not AvailablePositive3391085 - 339184326337.2
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyasePD630_RS15210Not AvailablePositive3391836 - 339271432208.8
pyridoxamine 5'-phosphate oxidase family proteinPD630_RS15215Not AvailableNegative3392656 - 339336025695.2
osmc family proteinPD630_RS15220Not AvailablePositive3393508 - 339394815785.5
hypothetical proteinPD630_RS15225Not AvailablePositive3393948 - 339487730397.7
acylphosphatasePD630_RS15230Not AvailablePositive3394892 - 33951529497.36
hypothetical proteinPD630_RS15235Not AvailablePositive3395175 - 3398779130501.0
signal recognition particle-docking protein ftsyPD630_RS15240Not AvailablePositive3398846 - 340024948673.3
ammonium transporterPD630_RS15245Not AvailablePositive3400461 - 340182846491.9
p-ii family nitrogen regulatorPD630_RS15250Not AvailablePositive3401833 - 340217112071.6

Displaying genes 3201 – 3210 of 8400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.