Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Genus

Description

The endosymbiont of *Bathymodiolus septemdierum* strain Myojin Knoll is characterized by having a single replicon, indicating a streamlined genomic organization typical of endosymbiotic bacteria. This symbiotic relationship is significant, as it suggests a highly specialized adaptation to the unique ecological niche inhabited by the host, which thrives in deep-sea hydrothermal vent environments. The genomic information can be referenced through the accession number NZ_AP013042.1, which provides a basis for further exploration into the metabolic capabilities and evolutionary adaptations of this endosymbiont. Endosymbionts such as these often play crucial roles in nutrient cycling and energy transfer within their ecosystems, especially in nutrient-limited environments like those found at hydrothermal vents. The presence of a single replicon may suggest a reduced genome size, typical of endosymbionts that have evolved alongside their hosts, losing non-essential genes over time while retaining those necessary for their symbiotic functions. This evolutionary trend allows the endosymbiont to efficiently support the metabolic needs of *Bathymodiolus septemdierum*, which often rely on chemosynthetic processes to derive energy from the surrounding environment. In summary, the endosymbiont associated with *Bathymodiolus septemdierum* is adapted to a specialized lifestyle that reflects the unique conditions of hydrothermal vent ecosystems, showcasing the intricate relationships that exist between marine organisms and their microbial symbionts.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll


Gene Summary

Adenine Count

452411 bp

Thymine Count

447718 bp

Guanine Count

289199 bp

Cytosine Count

280106 bp

Genome Length

1469434 bp

Protein-coding Genes

1553 genes

Non-Coding Genes

2 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive575429 - 575458Not Available
tyrosine-type recombinase/integraseBSEPE_RS03045Not AvailableNegative575601 - 57657537383.3
hypothetical proteinBSEPE_RS03050Not AvailableNegative576572 - 57702717444.1
hypothetical proteinBSEPE_RS03055Not AvailableNegative577020 - 57735212820.6
helix-turn-helix domain-containing proteinBSEPE_RS03060Not AvailableNegative577349 - 57763610619.8
hypothetical proteinBSEPE_RS03065Not AvailablePositive577816 - 5780468417.15
hypothetical proteinBSEPE_RS03070Not AvailablePositive578039 - 5782758815.55
duf3310 domain-containing proteinBSEPE_RS03075Not AvailablePositive578268 - 57862713642.5
chc2 zinc finger domain-containing proteinBSEPE_RS03080Not AvailablePositive578608 - 581277100956.0
dna adenine methylaseBSEPE_RS03085Not AvailablePositive581450 - 58175211385.5

Displaying genes 1 – 10 of 1555 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

244 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 244 metabolites

Health Effects

No health effects information available for this bacterium.