Escherichia coli strain 2009-30

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 2009-30 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and exhibits mobility, attributed to the presence of flagella. It typically arranges in pairs or singles and thrives optimally at 37°C, classifying it as mesophilic. This strain is distinguished by having a single replicon and two membranes, characteristic of its Gram-negative nature. E. coli strain 2009-30 is predominantly host-associated, showing a wide range of potential hosts that include various species across multiple taxonomic groups, such as Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and many others, including mammals, birds, and even some invertebrates like Apis mellifera (honeybees) and certain plant species such as Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). This strain is known for its pathogenicity in humans, being implicated in a multitude of health issues including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as hemolytic uremic syndrome (HUS), which can lead to renal failure. The strain is associated with various health effects like diarrhea, neonatal meningitis, and even complications such as septicemia and peritonitis. The extensive host range and pathogenic potential of E. coli strain 2009-30 underscore its ecological versatility. Its ability to inhabit diverse environments and cause significant health issues in both humans and animals highlights the intricate relationships between microbial life and host health, emphasizing the importance of monitoring such strains in both clinical and ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 2009-30

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 2009-30
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 2009-30 scaffold191.1, whole genome

Gene Summary

Adenine Count

1309359 bp

Thymine Count

1314113 bp

Guanine Count

1340305 bp

Cytosine Count

1355047 bp

Genome Length

5319417 bp

Protein-coding Genes

4965 genes

Non-Coding Genes

357 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
eama family transporterCRX46_14065Not AvailableNegative2753032 - 275395533093.4
hypothetical proteinCRX46_14070Not AvailablePositive2754009 - 27541766513.92
is1 family transposaseCRX46_14075Not AvailablePositive2754210 - 27543013280.93
menaquinone-dependent protoporphyrinogen ix dehydrogenaseCRX46_14080Not AvailableNegative2754682 - 275522721200.4
trk system potassium transporter trkhCRX46_14085Not AvailableNegative2755239 - 275669052976.9
yigz family proteinCRX46_14090Not AvailableNegative2756729 - 275734321708.1
xaa-pro dipeptidaseCRX46_14095Not AvailableNegative2757343 - 275867450178.9
fatty acid oxidation complex subunit alpha fadbCRX46_14100Not AvailablePositive2758864 - 276105379646.5
acetyl-coa c-acyltransferase fadaCRX46_14105Not AvailablePositive2761063 - 276222640862.7
nad(p)h-flavin reductaseCRX46_14110Not AvailableNegative2762409 - 276311026227.4

Displaying genes 2921 – 2930 of 5322 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total