Photorhabdus sp. HUG-39

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus sp. HUG-39 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species is notable for possessing a single replicon, reflecting its genetic organization. The genomic data for Photorhabdus sp. HUG-39 can be accessed through the accession number NSCN00000000.1. Photorhabdus species are known to form symbiotic relationships with nematodes and play significant roles in the biological control of insect pests. They produce a variety of bioactive compounds that can influence other microorganisms and host organisms, contributing to their ecological niche. The motility conferred by flagella may enhance the bacterium's ability to colonize hosts or environments, which is critical for its survival and ecological function. In summary, Photorhabdus sp. HUG-39's Gram-negative classification, rod shape, flagella presence, and genomic structure are important traits that underscore its adaptability and ecological interactions. These characteristics may facilitate its role in biocontrol, making it a subject of interest for studies in microbial ecology and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus sp. HUG-39
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus sp. HUG-39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus sp. HUG-39 HU2_39_scf0133, whole genome shotgun

Gene Summary

Adenine Count

1419321 bp

Thymine Count

1409583 bp

Guanine Count

1039486 bp

Cytosine Count

1049753 bp

Genome Length

4964174 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

388 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yopn family type iii secretion system gatekeeper subunitCKY10_02240Not AvailablePositive448990 - 44986232121.3
tyea family type iii secretion system gatekeeper subunitCKY10_02245Not AvailablePositive449843 - 45013010854.8
type iii secretion chaperone sycnCKY10_02250Not AvailablePositive450127 - 45049814186.4
yscx family type iii secretion proteinCKY10_02255Not AvailablePositive450495 - 45086013484.3
type iii secretion proteinCKY10_02260Not AvailablePositive450863 - 45119212177.8
escv/yscv/hrcv family type iii secretion system export apparatus proteinCKY10_02265Not AvailablePositive451240 - 45330675349.4
type iii secretion system regulator lcrrCKY10_02270Not AvailablePositive453303 - 45373716722.2
type iii secretion protein lcrgCKY10_02275Not AvailablePositive453778 - 45405610412.5
virulence factorCKY10_02280Not AvailablePositive454075 - 45499234385.8
cesd/sycd/lcrh family type iii secretion system chaperoneCKY10_02285Not AvailablePositive455002 - 45550818533.6

Displaying genes 741 – 750 of 4405 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.