Photorhabdus sp. HUG-39

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus sp. HUG-39 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species is notable for possessing a single replicon, reflecting its genetic organization. The genomic data for Photorhabdus sp. HUG-39 can be accessed through the accession number NSCN00000000.1. Photorhabdus species are known to form symbiotic relationships with nematodes and play significant roles in the biological control of insect pests. They produce a variety of bioactive compounds that can influence other microorganisms and host organisms, contributing to their ecological niche. The motility conferred by flagella may enhance the bacterium's ability to colonize hosts or environments, which is critical for its survival and ecological function. In summary, Photorhabdus sp. HUG-39's Gram-negative classification, rod shape, flagella presence, and genomic structure are important traits that underscore its adaptability and ecological interactions. These characteristics may facilitate its role in biocontrol, making it a subject of interest for studies in microbial ecology and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus sp. HUG-39
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus sp. HUG-39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus sp. HUG-39 HU2_39_scf0133, whole genome shotgun

Gene Summary

Adenine Count

1419321 bp

Thymine Count

1409583 bp

Guanine Count

1039486 bp

Cytosine Count

1049753 bp

Genome Length

4964174 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

388 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
riboflavin biosynthesis protein ribdCKY10_01625Not AvailablePositive327945 - 32903339474.6
6,7-dimethyl-8-ribityllumazine synthaseCKY10_01630Not AvailablePositive329160 - 32963016043.4
transcription antitermination factor nusbCKY10_01635Not AvailablePositive329657 - 33007315390.5
thiamine-phosphate kinaseCKY10_01640Not AvailablePositive330174 - 33116335941.9
phosphatidylglycerophosphatase aCKY10_01645Not AvailablePositive331156 - 33164718920.8
type ii toxin-antitoxin system antitoxin, relb/dinj familyCKY10_01650Not AvailablePositive331837 - 33210910097.3
type ii toxin-antitoxin system mrna interferase toxin, rele/stbe familyCKY10_01655Not AvailablePositive332081 - 33240412358.8
1-deoxy-d-xylulose-5-phosphate synthaseCKY10_01660Not AvailableNegative332571 - 33443668239.3
(2e,6e)-farnesyl diphosphate synthaseCKY10_01665Not AvailableNegative334499 - 33541633306.9
exodeoxyribonuclease vii small subunitCKY10_01670Not AvailableNegative335421 - 33569910215.9

Displaying genes 621 – 630 of 4405 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.