Photorhabdus sp. HUG-39

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus sp. HUG-39 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species is notable for possessing a single replicon, reflecting its genetic organization. The genomic data for Photorhabdus sp. HUG-39 can be accessed through the accession number NSCN00000000.1. Photorhabdus species are known to form symbiotic relationships with nematodes and play significant roles in the biological control of insect pests. They produce a variety of bioactive compounds that can influence other microorganisms and host organisms, contributing to their ecological niche. The motility conferred by flagella may enhance the bacterium's ability to colonize hosts or environments, which is critical for its survival and ecological function. In summary, Photorhabdus sp. HUG-39's Gram-negative classification, rod shape, flagella presence, and genomic structure are important traits that underscore its adaptability and ecological interactions. These characteristics may facilitate its role in biocontrol, making it a subject of interest for studies in microbial ecology and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus sp. HUG-39
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus sp. HUG-39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus sp. HUG-39 HU2_39_scf0133, whole genome shotgun

Gene Summary

Adenine Count

1419321 bp

Thymine Count

1409583 bp

Guanine Count

1039486 bp

Cytosine Count

1049753 bp

Genome Length

4964174 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

388 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCKY10_00985Not AvailableNegative212312 - 21287820396.7
c4-dicarboxylic acid transporter dauaCKY10_00990Not AvailablePositive213807 - 21552261486.9
3-deoxy-8-phosphooctulonate synthaseCKY10_00995Not AvailableNegative215669 - 21652330734.3
hypothetical proteinCKY10_01000Not AvailableNegative216606 - 21741530463.9
protein-(glutamine-n5) methyltransferase, release factor-specificCKY10_01005Not AvailableNegative217399 - 21824731382.3
peptide chain release factor 1CKY10_01010Not AvailableNegative218247 - 21932940582.8
glutamyl-trna reductaseCKY10_01015Not AvailableNegative219361 - 22062346924.5
lipoprotein localization factor lolbCKY10_01020Not AvailablePositive221001 - 22162424071.7
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseCKY10_01025Not AvailablePositive221624 - 22249932134.5
ribose-phosphate pyrophosphokinaseCKY10_01030Not AvailablePositive222506 - 22351036454.2

Displaying genes 561 – 570 of 4405 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.