Photorhabdus sp. HUG-39

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus sp. HUG-39 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species is notable for possessing a single replicon, reflecting its genetic organization. The genomic data for Photorhabdus sp. HUG-39 can be accessed through the accession number NSCN00000000.1. Photorhabdus species are known to form symbiotic relationships with nematodes and play significant roles in the biological control of insect pests. They produce a variety of bioactive compounds that can influence other microorganisms and host organisms, contributing to their ecological niche. The motility conferred by flagella may enhance the bacterium's ability to colonize hosts or environments, which is critical for its survival and ecological function. In summary, Photorhabdus sp. HUG-39's Gram-negative classification, rod shape, flagella presence, and genomic structure are important traits that underscore its adaptability and ecological interactions. These characteristics may facilitate its role in biocontrol, making it a subject of interest for studies in microbial ecology and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus sp. HUG-39
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus sp. HUG-39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus sp. HUG-39 HU2_39_scf0133, whole genome shotgun

Gene Summary

Adenine Count

1419321 bp

Thymine Count

1409583 bp

Guanine Count

1039486 bp

Cytosine Count

1049753 bp

Genome Length

4964174 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

388 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfate adenylyltransferase subunit cysdCKY10_20795Not AvailablePositive4629554 - 463046235319.2
sulfate adenylyltransferase subunit cysnCKY10_20800Not AvailablePositive4630474 - 463191653937.7
adenylyl-sulfate kinaseCKY10_20805Not AvailablePositive4631918 - 463255023390.1
cell division protein ftsbCKY10_20810Not AvailablePositive4632697 - 463301712048.4
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseCKY10_20815Not AvailablePositive4633023 - 463375426636.1
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseCKY10_20820Not AvailablePositive4633768 - 463424116935.6
trna pseudouridine(13) synthase trudCKY10_20825Not AvailablePositive4634245 - 463529439572.9
5'/3'-nucleotidase sureCKY10_20830Not AvailablePositive4635272 - 463603627278.6
protein-l-isoaspartate o-methyltransferaseCKY10_20835Not AvailablePositive4636030 - 463665623132.2
murein hydrolase activator nlpdCKY10_20840Not AvailablePositive4636809 - 463780435681.0

Displaying genes 4021 – 4030 of 4405 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.