Photorhabdus bodei strain LJ24-63

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus bodei strain LJ24-63 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which contribute to its motility. This strain possesses a single replicon, indicating a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The genomic data for this strain is cataloged under the accession number NSCM00000000.1. Given its classification within the Photorhabdus genus, this strain is likely to exhibit traits typical of entomopathogenic bacteria, which often form symbiotic relationships with nematodes. These interactions are significant in the biological control of insect pests, providing an ecological role in regulating pest populations. The motility conferred by flagella may enhance its ability to colonize host organisms or navigate through various environments, supporting its life cycle and symbiotic relationships. The traits of Photorhabdus bodei strain LJ24-63 highlight its potential utility in biocontrol strategies, particularly in agriculture, where managing pest populations is crucial for sustainable practices. Further research into its specific interactions within ecosystems could elucidate its contributions to microbial diversity and its role in agricultural health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus bodei
Strainstrain LJ24-63

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus bodei strain LJ24-63
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus bodei strain LJ24-63 LJ_63_scf0192, whole genome

Gene Summary

Adenine Count

1446764 bp

Thymine Count

1451904 bp

Guanine Count

1077647 bp

Cytosine Count

1083383 bp

Genome Length

5059726 bp

Protein-coding Genes

3932 genes

Non-Coding Genes

323 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid stabilization proteinCKY02_16285Not AvailablePositive3691838 - 36920899270.91
type ii toxin-antitoxin system mrna interferase toxin, rele/stbe familyCKY02_16290Not AvailablePositive3692079 - 369236010806.3
hypothetical proteinCKY02_16295Not AvailableNegative3692487 - 369288215240.2
aspartate--trna ligaseCKY02_16300Not AvailablePositive3693159 - 369493166199.5
dihydroneopterin triphosphate diphosphataseCKY02_16305Not AvailablePositive3694931 - 369536817233.4
yebc/pmpr family dna-binding transcriptional regulatorCKY02_16310Not AvailablePositive3695398 - 369614126407.8
crossover junction endodeoxyribonuclease ruvcCKY02_16315Not AvailablePositive3696379 - 369690018804.0
holliday junction branch migration protein ruvaCKY02_16320Not AvailablePositive3696980 - 369759722334.1
holliday junction branch migration dna helicase ruvbCKY02_16325Not AvailablePositive3697614 - 369862136995.7
zinc abc transporter permeaseCKY02_16330Not AvailableNegative3698840 - 369962527995.6

Displaying genes 3131 – 3140 of 4255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.