Photorhabdus bodei strain LJ24-63

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus bodei strain LJ24-63 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which contribute to its motility. This strain possesses a single replicon, indicating a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The genomic data for this strain is cataloged under the accession number NSCM00000000.1. Given its classification within the Photorhabdus genus, this strain is likely to exhibit traits typical of entomopathogenic bacteria, which often form symbiotic relationships with nematodes. These interactions are significant in the biological control of insect pests, providing an ecological role in regulating pest populations. The motility conferred by flagella may enhance its ability to colonize host organisms or navigate through various environments, supporting its life cycle and symbiotic relationships. The traits of Photorhabdus bodei strain LJ24-63 highlight its potential utility in biocontrol strategies, particularly in agriculture, where managing pest populations is crucial for sustainable practices. Further research into its specific interactions within ecosystems could elucidate its contributions to microbial diversity and its role in agricultural health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus bodei
Strainstrain LJ24-63

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus bodei strain LJ24-63
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus bodei strain LJ24-63 LJ_63_scf0192, whole genome

Gene Summary

Adenine Count

1446764 bp

Thymine Count

1451904 bp

Guanine Count

1077647 bp

Cytosine Count

1083383 bp

Genome Length

5059726 bp

Protein-coding Genes

3932 genes

Non-Coding Genes

323 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
escc/yscc/hrcc family type iii secretion system outer membrane ring proteinCKY02_05310Not AvailablePositive1193725 - 119556668064.1
escd/yscd/hrpq family type iii secretion system inner membrane ring proteinCKY02_05315Not AvailablePositive1195563 - 119683147769.5
esce/ysce/ssae family type iii secretion system needle protein co-chaperoneCKY02_05320Not AvailablePositive1196828 - 11970679050.54
escf/yscf/hrpa family type iii secretion system needle major subunitCKY02_05325Not AvailablePositive1197033 - 11972879259.07
yscg family type iii secretion proteinCKY02_05330Not AvailablePositive1197290 - 119764313043.5
yopr family type iii secretion effectorCKY02_05335Not AvailablePositive1197636 - 119820221604.6
esci/ysci/hrpb family type iii secretion system inner rod proteinCKY02_05340Not AvailablePositive1198278 - 119861612542.9
escj/yscj/hrcj family type iii secretion inner membrane ring proteinCKY02_05345Not AvailablePositive1198650 - 119936026109.8
preprotein translocase kCKY02_05350Not AvailablePositive1199361 - 119998723827.0
hrpe/yscl family type iii secretion apparatus proteinCKY02_05355Not AvailablePositive1199966 - 120058323312.8

Displaying genes 1201 – 1210 of 4255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.