Photorhabdus sp. S9-53

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus sp. S9-53 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella. This motility feature suggests an ability to navigate through its environment, which can be critical for its ecological interactions. The organism possesses a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and efficiency in various environments. The genomic data for Photorhabdus sp. S9-53 is cataloged under the accession number NSCK00000000.1, which provides a reference point for further research and comparative studies within the genus Photorhabdus. Photorhabdus species are often associated with entomopathogenic nematodes and play a significant role in the biological control of insect pests. Their ecological importance stems from their ability to produce a range of bioactive compounds, which can be beneficial for pest management and agricultural practices. The traits of Photorhabdus sp. S9-53, particularly its motility and genetic characteristics, may enhance its effectiveness in these roles, potentially impacting both pest populations and the broader ecosystem dynamics. Understanding the specific capabilities and interactions of this strain can contribute to the development of sustainable pest control strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus sp. S9-53
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus sp. S9-53
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus sp. S9-53 S9_53_scf0197, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4216 genes

Non-Coding Genes

388 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath small subunitCKY03_13170Not AvailablePositive3060470 - 306096718308.0
type vi secretion system contractile sheath large subunitCKY03_13175Not AvailablePositive3060991 - 306246955752.2
type vi secretion system baseplate subunit tsseCKY03_13180Not AvailablePositive3062476 - 306291616549.4
type vi secretion system baseplate subunit tssfCKY03_13185Not AvailablePositive3062918 - 306476270963.2
type vi secretion system baseplate subunit tssgCKY03_13190Not AvailablePositive3064726 - 306577839778.7
type vi secretion system-associated fha domain protein taghCKY03_13195Not AvailablePositive3065784 - 306707048221.5
type vi secretion system lipoprotein tssjCKY03_13200Not AvailablePositive3067070 - 306763621013.2
type vi secretion system baseplate subunit tsskCKY03_13205Not AvailablePositive3067639 - 306899150620.7
hypothetical proteinCKY03_13210Not AvailablePositive3068991 - 306976129858.2
type vi secretion system atpase tsshCKY03_13215Not AvailablePositive3069772 - 307239997520.7

Displaying genes 2731 – 2740 of 4615 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.