Escherichia coli strain ECSW+04

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain ECSW+04 is a Gram-negative, facultative anaerobic bacterium characterized by its rod shape and motility, facilitated by the presence of flagella. This strain is mesophilic, with an optimal growth temperature of 37°C, and exhibits a unique cell arrangement in pairs and singles. ECSW+04 is predominantly host-associated, demonstrating a free-living biotic relationship with a diverse range of hosts, including Homo sapiens, various livestock such as Bos taurus and Sus scrofa, as well as other vertebrates and plants like Solanum lycopersicum and Brassica oleracea var. italica. Notably, this strain is associated with a wide array of health effects, particularly in humans, where it is implicated in urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as septicemia and hemolytic uremic syndrome (HUS). The strain's pathogenicity is predominantly human-centric, but it also affects other species, including livestock and pets, indicating its potential for zoonotic transmission. The presence of ECSW+04 in diverse ecological niches and its ability to cause significant health issues underscore its ecological versatility and importance. Understanding its interactions within various hosts and environments can provide valuable insights into its role in disease dynamics and potential impacts on public health, especially in relation to foodborne infections and cross-species transmission.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain ECSW+04

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain ECSW+04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain ECSW+04


Gene Summary

Adenine Count

1364904 bp

Thymine Count

1371449 bp

Guanine Count

1395199 bp

Cytosine Count

1378666 bp

Genome Length

5510218 bp

Protein-coding Genes

5270 genes

Non-Coding Genes

453 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna,type:arg,anti_codon:tct;Not AvailableNot AvailablePositive358932 - 359008Not Available
Trna,type:undet,anti_codon:???;Not AvailableNot AvailablePositive359022 - 359102Not Available
Trna,type:met,anti_codon:cat;Not AvailableNot AvailablePositive359110 - 359185Not Available
Putative dna methylaseCI694_02250Not AvailableNegative359226 - 36028440377.2
Hypothetical proteinCI694_02255Not AvailableNegative360435 - 3606327469.08
hypothetical proteinCI694_02260Not AvailableNegative360942 - 36148420718.4
Crossover junction endodeoxyribonuclease rusaCI694_02265Not AvailableNegative361487 - 36185213989.0
Hypothetical proteinCI694_02270Not AvailableNegative361865 - 36291139175.2
Hypothetical proteinCI694_02275Not AvailableNegative362913 - 36318511233.3
hypothetical proteinCI694_02280Not AvailableNegative363323 - 36378417255.8

Displaying genes 51 – 60 of 5723 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total