Edwardsiella tarda FL6-60

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

Edwardsiella tarda FL6-60 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is notable for possessing two replicons, indicating a complex genomic structure that may play a role in its adaptability and survival in various environments. The accession numbers associated with Edwardsiella tarda FL6-60 are NC_017309.1 and NC_017318.1, which provide a reference for genomic sequences that can be utilized in further studies. These sequences can aid in understanding the genetic makeup and potential pathogenic mechanisms of this organism. Edwardsiella tarda is primarily known for its role as an opportunistic pathogen in aquatic environments and can infect a variety of hosts, including fish and humans. The ecological insight regarding E. tarda FL6-60 emphasizes its potential impact on aquatic ecosystems, particularly in relation to fish health. The presence of flagella allows for efficient movement in water, facilitating colonization and interaction with host organisms. This motility may contribute to the bacterium's pathogenicity, highlighting the importance of understanding its biology for managing health in both aquaculture and natural water systems. The dual replicon structure may also afford this organism genetic flexibility, allowing it to adapt to different environmental stresses or host defenses. Overall, the traits of Edwardsiella tarda FL6-60 underscore its significance in both microbiological research and aquatic ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella tarda
StrainFL6-60

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Edwardsiella tarda FL6-60
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence.

Gene Summary

Adenine Count

10505 bp

Thymine Count

10958 bp

Guanine Count

12407 bp

Cytosine Count

10324 bp

Genome Length

44194 bp

Protein-coding Genes

7 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase foldETAF_RS12170Not AvailablePositive2759124 - 275998130502.0
ribosome-associated protein ybcjETAF_RS12175Not AvailablePositive2760102 - 27603147625.18
cysteine--trna ligaseETAF_RS12180Not AvailableNegative2760378 - 276176351952.6
peptidylprolyl isomerase bETAF_RS12185Not AvailablePositive2761952 - 276244618275.5
udp-2,3-diacylglucosamine diphosphataseETAF_RS12190Not AvailablePositive2762455 - 276323429460.7
ggdef domain-containing proteinETAF_RS12195Not AvailableNegative2763177 - 276438545149.7
5-(carboxyamino)imidazole ribonucleotide mutaseETAF_RS12200Not AvailablePositive2764821 - 276533017491.2
5-(carboxyamino)imidazole ribonucleotide synthaseETAF_RS12205Not AvailablePositive2765327 - 276639739701.9
putative abc transporter permease subunit ybbpETAF_RS12210Not AvailableNegative2766401 - 276880388191.7
putative abc transporter atp-binding protein ybbaETAF_RS12215Not AvailableNegative2768800 - 276948624772.0

Displaying genes 2551 – 2560 of 3387 in total

Metabolites

1779 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da

Displaying 1–10 of 1779 metabolites

Health Effects

No health effects information available for this bacterium.