Edwardsiella tarda FL6-60

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

Edwardsiella tarda FL6-60 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is notable for possessing two replicons, indicating a complex genomic structure that may play a role in its adaptability and survival in various environments. The accession numbers associated with Edwardsiella tarda FL6-60 are NC_017309.1 and NC_017318.1, which provide a reference for genomic sequences that can be utilized in further studies. These sequences can aid in understanding the genetic makeup and potential pathogenic mechanisms of this organism. Edwardsiella tarda is primarily known for its role as an opportunistic pathogen in aquatic environments and can infect a variety of hosts, including fish and humans. The ecological insight regarding E. tarda FL6-60 emphasizes its potential impact on aquatic ecosystems, particularly in relation to fish health. The presence of flagella allows for efficient movement in water, facilitating colonization and interaction with host organisms. This motility may contribute to the bacterium's pathogenicity, highlighting the importance of understanding its biology for managing health in both aquaculture and natural water systems. The dual replicon structure may also afford this organism genetic flexibility, allowing it to adapt to different environmental stresses or host defenses. Overall, the traits of Edwardsiella tarda FL6-60 underscore its significance in both microbiological research and aquatic ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella tarda
StrainFL6-60

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Edwardsiella tarda FL6-60
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Edwardsiella tarda FL6-60, complete sequence.

Gene Summary

Adenine Count

740723 bp

Thymine Count

740237 bp

Guanine Count

1101458 bp

Cytosine Count

1102189 bp

Genome Length

3684607 bp

Protein-coding Genes

3202 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive106 - 117Not Available
Hypothetical proteinETAF_RS16245Not AvailablePositive1879 - 220211194.4
Conserved hypothetical bacteriophage proteinETAF_RS16250Not AvailablePositive2195 - 247610210.3
Putative tail componentETAF_RS16255Not AvailablePositive2488 - 306621553.6
Minor tail proteinETAF_RS16260Not AvailablePositive3063 - 347615453.2
Major tail proteinETAF_RS16265Not AvailablePositive3478 - 424826849.0
Tail assembly chaperoneETAF_RS16270Not AvailablePositive4256 - 469916261.8
Bacteriophage tail assembly chapterone - part of g+g' frameshift hybrid proteinETAF_RS16275Not AvailablePositive4708 - 503412194.5
Bacteriophage tail tape measure proteinETAF_RS16280Not AvailablePositive5024 - 7840100615.0
Bacteriophage tail tip assembly proteinETAF_RS17170Not AvailablePositive7840 - 816912627.1

Displaying genes 1 – 10 of 3387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2099 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 2099 metabolites

Health Effects

No health effects information available for this bacterium.