Edwardsiella tarda FL6-60

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

Edwardsiella tarda FL6-60 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is notable for possessing two replicons, indicating a complex genomic structure that may play a role in its adaptability and survival in various environments. The accession numbers associated with Edwardsiella tarda FL6-60 are NC_017309.1 and NC_017318.1, which provide a reference for genomic sequences that can be utilized in further studies. These sequences can aid in understanding the genetic makeup and potential pathogenic mechanisms of this organism. Edwardsiella tarda is primarily known for its role as an opportunistic pathogen in aquatic environments and can infect a variety of hosts, including fish and humans. The ecological insight regarding E. tarda FL6-60 emphasizes its potential impact on aquatic ecosystems, particularly in relation to fish health. The presence of flagella allows for efficient movement in water, facilitating colonization and interaction with host organisms. This motility may contribute to the bacterium's pathogenicity, highlighting the importance of understanding its biology for managing health in both aquaculture and natural water systems. The dual replicon structure may also afford this organism genetic flexibility, allowing it to adapt to different environmental stresses or host defenses. Overall, the traits of Edwardsiella tarda FL6-60 underscore its significance in both microbiological research and aquatic ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella tarda
StrainFL6-60

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Edwardsiella tarda FL6-60
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence.

Gene Summary

Adenine Count

10505 bp

Thymine Count

10958 bp

Guanine Count

12407 bp

Cytosine Count

10324 bp

Genome Length

44194 bp

Protein-coding Genes

7 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phest operon leader peptide phemETAF_RS17395Not AvailableNegative1876327 - 18763711732.1
50s ribosomal protein l20ETAF_RS08250Not AvailableNegative1876534 - 187689013511.7
50s ribosomal protein l35ETAF_RS08255Not AvailableNegative1876934 - 18771317266.23
translation initiation factor if-3ETAF_RS08260Not AvailableNegative1877228 - 187777020404.9
threonine--trna ligaseETAF_RS08265Not AvailableNegative1877774 - 187970273882.2
choline bcct transporter bettETAF_RS08270Not AvailableNegative1879930 - 188194574402.3
hypothetical proteinETAF_RS08275Not AvailableNegative1882449 - 188294017715.1
yobh family proteinETAF_RS08280Not AvailablePositive1883899 - 18841358441.67
dna starvation/stationary phase protection protein dpsETAF_RS08285Not AvailablePositive1884442 - 188495118566.2
6-phosphofructokinase iiETAF_RS08290Not AvailableNegative1885025 - 188597832818.6

Displaying genes 1751 – 1760 of 3387 in total

Metabolites

1779 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da

Displaying 1–10 of 1779 metabolites

Health Effects

No health effects information available for this bacterium.