Bacteroides fragilis 638R

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis 638R is a gram-negative, rod-shaped bacterium that is classified as a chemoorganotroph, utilizing organic compounds as its energy source. This species is characterized by its anaerobic lifestyle, thriving in environments devoid of oxygen. B. fragilis 638R is typically found in host-associated habitats, indicating a close relationship with its host organisms, which include humans and other animals. The bacterium is non-motile and does not possess flagella, which suggests that it relies on other means for spatial distribution within its ecological niche. B. fragilis 638R exists as single cells rather than forming clusters or chains, which may influence its interactions with other microorganisms in the gastrointestinal tract. Optimal growth of B. fragilis 638R occurs at a temperature of 37°C, aligning with the typical body temperature of its host, and it is classified as mesophilic, indicating a preference for moderate temperature ranges. The organism possesses a complex cell structure, characterized by two membranes, which is a common trait among gram-negative bacteria. It contains one replicon, which simplifies its genetic maintenance. Ecologically, B. fragilis 638R plays a significant role in the gut microbiome, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. Its free-living nature, coupled with its adaptation to anaerobic conditions, underscores its importance in maintaining the balance of gut microbiota and supporting overall digestive health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain638R

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis 638R
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis 638R


Gene Summary

Adenine Count

1516915 bp

Thymine Count

1523463 bp

Guanine Count

1164365 bp

Cytosine Count

1168378 bp

Genome Length

5373121 bp

Protein-coding Genes

4308 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive4289846 - 4289861Not Available
3_nc_021792: site specific recombinase, tyrosineBF638R_RS17415Not AvailablePositive4290022 - 429135652256.9
slbb domain-containing proteinBF638R_RS17420Not AvailableNegative4291582 - 429369077763.7
duf6808 domain-containing proteinBF638R_RS17425Not AvailableNegative4294095 - 429455917545.4
Putative n-acetylmuramoyl-l-alanine amidaseBF638R_RS17430Not AvailableNegative4294556 - 429505018478.0
HolinBF638R_RS17435Not AvailableNegative4295936 - 429637016430.6
hypothetical proteinBF638R_RS17440Not AvailableNegative4296659 - 429699112241.3
hypothetical proteinBF638R_RS17445Not AvailableNegative4296995 - 429727910614.7
Putative phage tail fibre proteinBF638R_RS17450Not AvailableNegative4297330 - 4300941129736.0
Hypothetical proteinBF638R_RS17455Not AvailableNegative4300938 - 430298678030.2

Displaying genes 1 – 10 of 4417 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

429 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 429 metabolites

Health Effects

No health effects information available for this bacterium.