Flavobacterium columnare ATCC 49512

Gram-negativeRodMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium columnare ATCC 49512 is a Gram-negative, rod-shaped bacterium recognized for its pathogenicity specifically in fish. This organism is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, and it exhibits facultative anaerobic respiration, allowing it to thrive in various oxygen conditions. The bacterium is mesophilic, meaning it prefers moderate temperature ranges, which aligns with the environmental conditions typical of many aquatic habitats where it is found. Flavobacterium columnare is motile due to the presence of flagella, facilitating its movement within its diverse habitats. Notably, Flavobacterium columnare does not form spores, which suggests a reliance on other survival strategies under adverse conditions. With one replicon in its genome, it has a relatively simple genetic organization compared to more complex organisms. Ecologically, the presence of Flavobacterium columnare in aquatic environments can have significant implications for fish populations, as it is known to be a pathogen affecting various fish species. Outbreaks of disease caused by this bacterium can lead to substantial economic losses in aquaculture and impact natural fish populations. Understanding the traits and ecological role of Flavobacterium columnare is crucial for managing fish health and developing strategies to mitigate its pathogenic effects.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare
StrainATCC 49512

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium columnare ATCC 49512
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
Pathogenicityfish

Genome Summary

Flavobacterium columnare ATCC 49512, complete sequence.

Gene Summary

Adenine Count

1082092 bp

Thymine Count

1085296 bp

Guanine Count

495287 bp

Cytosine Count

499757 bp

Genome Length

3162432 bp

Protein-coding Genes

2683 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhomboid family intramembrane serine proteaseFCOL_RS12590Not AvailableNegative2890046 - 289078627986.5
dna mismatch repair endonuclease mutlFCOL_RS12595Not AvailableNegative2890783 - 289266069894.5
6,7-dimethyl-8-ribityllumazine synthaseFCOL_RS12600Not AvailableNegative2892847 - 289333517787.3
tetratricopeptide repeat proteinFCOL_RS12605Not AvailableNegative2893404 - 289421029320.1
dna replication/repair protein recfFCOL_RS12610Not AvailablePositive2894341 - 289542041899.4
thioredoxinFCOL_RS12615Not AvailablePositive2895451 - 289614326220.9
duf2461 domain-containing proteinFCOL_RS12620Not AvailablePositive2896644 - 289731826575.9
udp-n-acetylmuramate dehydrogenaseFCOL_RS12625Not AvailablePositive2897394 - 289840737873.3
glycosyltransferaseFCOL_RS12630Not AvailablePositive2898875 - 289998743204.4
rna polymerase sigma factorFCOL_RS12635Not AvailablePositive2899978 - 290052621431.6

Displaying genes 2541 – 2550 of 2791 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.