Flavobacterium columnare ATCC 49512

Gram-negativeRodMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium columnare ATCC 49512 is a Gram-negative, rod-shaped bacterium recognized for its pathogenicity specifically in fish. This organism is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, and it exhibits facultative anaerobic respiration, allowing it to thrive in various oxygen conditions. The bacterium is mesophilic, meaning it prefers moderate temperature ranges, which aligns with the environmental conditions typical of many aquatic habitats where it is found. Flavobacterium columnare is motile due to the presence of flagella, facilitating its movement within its diverse habitats. Notably, Flavobacterium columnare does not form spores, which suggests a reliance on other survival strategies under adverse conditions. With one replicon in its genome, it has a relatively simple genetic organization compared to more complex organisms. Ecologically, the presence of Flavobacterium columnare in aquatic environments can have significant implications for fish populations, as it is known to be a pathogen affecting various fish species. Outbreaks of disease caused by this bacterium can lead to substantial economic losses in aquaculture and impact natural fish populations. Understanding the traits and ecological role of Flavobacterium columnare is crucial for managing fish health and developing strategies to mitigate its pathogenic effects.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare
StrainATCC 49512

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium columnare ATCC 49512
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
Pathogenicityfish

Genome Summary

Flavobacterium columnare ATCC 49512, complete sequence.

Gene Summary

Adenine Count

1082092 bp

Thymine Count

1085296 bp

Guanine Count

495287 bp

Cytosine Count

499757 bp

Genome Length

3162432 bp

Protein-coding Genes

2683 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophan--trna ligaseFCOL_RS10260Not AvailablePositive2347206 - 234817736273.6
duf3108 domain-containing proteinFCOL_RS10265Not AvailablePositive2348512 - 234929430106.3
tryptophan 2,3-dioxygenase family proteinFCOL_RS10270Not AvailablePositive2349299 - 235022237304.2
glucose-6-phosphate isomeraseFCOL_RS10275Not AvailablePositive2350295 - 235193562314.2
tonb-dependent receptorFCOL_RS10280Not AvailablePositive2352112 - 2354859101023.0
mmcq/yjbr family dna-binding proteinFCOL_RS10285Not AvailableNegative2355205 - 235557014086.9
gnat family n-acetyltransferaseFCOL_RS10290Not AvailableNegative2355797 - 235619815571.0
cyclase family proteinFCOL_RS10295Not AvailableNegative2356205 - 235699029702.3
radical sam family heme chaperone hemwFCOL_RS10300Not AvailableNegative2357054 - 235820243816.4
crossover junction endodeoxyribonuclease ruvcFCOL_RS10305Not AvailableNegative2358426 - 235897720564.3

Displaying genes 2071 – 2080 of 2791 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.