Oscillibacter valericigenes Sjm18-20

rodNon-motileanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Oscillibacter

Description

Oscillibacter valericigenes Sjm18-20 is a Gram-negative, non-spore-forming bacterium that exhibits a rod shape and is classified as a chemoheterotroph. This organism thrives in anaerobic conditions, making it well-suited for environments devoid of oxygen. The optimal growth temperature for Oscillibacter valericigenes Sjm18-20 is 29°C, placing it within the mesophilic temperature range, which is conducive to many microbial processes. Notably, Oscillibacter valericigenes Sjm18-20 possesses flagella, suggesting potential motility; however, it is characterized as non-motile, indicating that while it may have the capability for movement, it does not actively utilize this feature. The bacterium has two replicons, which are essential for its genetic stability and reproduction. The ecological role of Oscillibacter valericigenes Sjm18-20 can be inferred from its metabolic capabilities and environmental preferences. As a chemoheterotroph in anaerobic environments, it likely participates in the breakdown of complex organic materials, contributing to biogeochemical cycles, particularly in habitats such as anoxic sediments or the intestines of animals. This bacterium may play a pivotal role in the fermentation processes, potentially influencing the metabolic pathways and community structures of microbial consortia in these environments. Accessions for this bacterium include NC_016046.1 and NC_016048.1, which provide valuable resources for further genomic and functional studies.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusOscillibacter
SpeciesOscillibacter valericigenes
StrainSjm18-20

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Oscillibacter valericigenes Sjm18-20
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Oscillibacter valericigenes Sjm18-20


Gene Summary

Adenine Count

18984 bp

Thymine Count

15351 bp

Guanine Count

14510 bp

Cytosine Count

11741 bp

Genome Length

60586 bp

Protein-coding Genes

65 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinOBV_RS22795P18016Positive1 - 172866025.7
hypothetical proteinOBV_RS21460Not AvailablePositive2280 - 279520017.0
para family proteinOBV_RS21465Not AvailablePositive2966 - 376029376.2
parb n-terminal domain-containing proteinOBV_RS21470Not AvailablePositive3774 - 502446892.9
hypothetical proteinOBV_RS21475Not AvailablePositive5072 - 546714923.7
hypothetical proteinOBV_RS21480Not AvailablePositive5464 - 573910479.8
type ii toxin-antitoxin system relb/dinj family antitoxinOBV_RS21485Not AvailablePositive5864 - 619312915.6
hypothetical proteinOBV_RS21490Not AvailablePositive6218 - 651110858.8
hypothetical proteinOBV_RS21495Not AvailablePositive7160 - 761217009.0
hypothetical proteinOBV_RS25310Not AvailablePositive7648 - 78246332.46

Displaying genes 1 – 10 of 4486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021245-dehydro-4-deoxy-D-glucarateC6H6O7Chemical structure of 5-dehydro-4-deoxy-D-glucarateNot available
Average190.1076Da
Monoisotopic190.0113525Da
BASm0003317S-methyl-L-methionineC6H14NO2SChemical structure of S-methyl-L-methionine4727-40-6
Average164.246Da
Monoisotopic164.074524387Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da
BASm0005774alpha-D-glucosamine 6-phosphateC6H13NO8PNot available3616-42-0
Average258.143Da
Monoisotopic258.038426961Da
BASm0007424(2R)-hydroxytetradecanoateC14H27O3Chemical structure of (2R)-hydroxytetradecanoateNot available
Average243.368Da
Monoisotopic243.1965683Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.