Oscillibacter valericigenes Sjm18-20

rodNon-motileanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Oscillibacter

Description

Oscillibacter valericigenes Sjm18-20 is a Gram-negative, non-spore-forming bacterium that exhibits a rod shape and is classified as a chemoheterotroph. This organism thrives in anaerobic conditions, making it well-suited for environments devoid of oxygen. The optimal growth temperature for Oscillibacter valericigenes Sjm18-20 is 29°C, placing it within the mesophilic temperature range, which is conducive to many microbial processes. Notably, Oscillibacter valericigenes Sjm18-20 possesses flagella, suggesting potential motility; however, it is characterized as non-motile, indicating that while it may have the capability for movement, it does not actively utilize this feature. The bacterium has two replicons, which are essential for its genetic stability and reproduction. The ecological role of Oscillibacter valericigenes Sjm18-20 can be inferred from its metabolic capabilities and environmental preferences. As a chemoheterotroph in anaerobic environments, it likely participates in the breakdown of complex organic materials, contributing to biogeochemical cycles, particularly in habitats such as anoxic sediments or the intestines of animals. This bacterium may play a pivotal role in the fermentation processes, potentially influencing the metabolic pathways and community structures of microbial consortia in these environments. Accessions for this bacterium include NC_016046.1 and NC_016048.1, which provide valuable resources for further genomic and functional studies.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusOscillibacter
SpeciesOscillibacter valericigenes
StrainSjm18-20

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Oscillibacter valericigenes Sjm18-20
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Oscillibacter valericigenes Sjm18-20, complete sequence.

Gene Summary

Adenine Count

1024033 bp

Thymine Count

1034521 bp

Guanine Count

1169759 bp

Cytosine Count

1181723 bp

Genome Length

4410036 bp

Protein-coding Genes

4254 genes

Non-Coding Genes

167 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinOBV_RS22795P18016Positive1 - 172866025.7
hypothetical proteinOBV_RS21460Not AvailablePositive2280 - 279520017.0
para family proteinOBV_RS21465Not AvailablePositive2966 - 376029376.2
parb n-terminal domain-containing proteinOBV_RS21470Not AvailablePositive3774 - 502446892.9
hypothetical proteinOBV_RS21475Not AvailablePositive5072 - 546714923.7
hypothetical proteinOBV_RS21480Not AvailablePositive5464 - 573910479.8
type ii toxin-antitoxin system relb/dinj family antitoxinOBV_RS21485Not AvailablePositive5864 - 619312915.6
hypothetical proteinOBV_RS21490Not AvailablePositive6218 - 651110858.8
hypothetical proteinOBV_RS21495Not AvailablePositive7160 - 761217009.0
hypothetical proteinOBV_RS25310Not AvailablePositive7648 - 78246332.46

Displaying genes 1 – 10 of 4486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

156 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 156 metabolites

Health Effects

No health effects information available for this bacterium.