Oscillibacter valericigenes Sjm18-20

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Oscillibacter

Description

Oscillibacter valericigenes Sjm18-20 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and proliferation. Oscillibacter species are often associated with the fermentation of carbohydrates, and the metabolic pathways of O. valericigenes may contribute to the breakdown of organic matter in its habitat. The anaerobic requirement of Oscillibacter valericigenes Sjm18-20 implies that it plays a significant role in anaerobic ecosystems, such as the gastrointestinal tracts of animals or in various sediment environments, where it could be involved in the degradation of complex organic compounds. This trait could potentially position the bacterium as a contributor to biogeochemical cycling, particularly in the conversion of organic material into simpler compounds, which are essential for nutrient recycling in anoxic conditions. Understanding the metabolic capabilities and ecological niches of O. valericigenes Sjm18-20 may provide insights into its role in maintaining microbial community dynamics and its potential applications in biotechnology, particularly in processes that exploit anaerobic fermentation pathways. Further exploration of its metabolic pathways could elucidate its contributions to ecosystem functions, particularly in environments rich in organic waste.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusOscillibacter
SpeciesOscillibacter valericigenes
StrainSjm18-20

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oscillibacter valericigenes Sjm18-20


Gene Summary

Adenine Count

18984 bp

Thymine Count

15351 bp

Guanine Count

14510 bp

Cytosine Count

11741 bp

Genome Length

60586 bp

Protein-coding Genes

65 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
helix-turn-helix domain-containing proteinOBV_RS22795P18016+1 - 172866025.7
hypothetical proteinOBV_RS21460Not Available+2280 - 279520017.0
para family proteinOBV_RS21465Not Available+2966 - 376029376.2
parb n-terminal domain-containing proteinOBV_RS21470Not Available+3774 - 502446892.9
hypothetical proteinOBV_RS21475Not Available+5072 - 546714923.7
hypothetical proteinOBV_RS21480Not Available+5464 - 573910479.8
type ii toxin-antitoxin system relb/dinj family antitoxinOBV_RS21485Not Available+5864 - 619312915.6
hypothetical proteinOBV_RS21490Not Available+6218 - 651110858.8
hypothetical proteinOBV_RS21495Not Available+7160 - 761217009.0
hypothetical proteinOBV_RS25310Not Available+7648 - 78246332.46

Displaying genes 1 – 10 of 4486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021245-dehydro-4-deoxy-D-glucarateC6H6O7Chemical structure of 5-dehydro-4-deoxy-D-glucarateNot available
Average190.1076Da
Monoisotopic190.0113525Da
BASm0003317S-methyl-L-methionineC6H14NO2SChemical structure of S-methyl-L-methionine4727-40-6
Average164.246Da
Monoisotopic164.074524387Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da
BASm0005774alpha-D-glucosamine 6-phosphateC6H13NO8PNot available3616-42-0
Average258.143Da
Monoisotopic258.038426961Da
BASm0007424(2R)-hydroxytetradecanoateC14H27O3Chemical structure of (2R)-hydroxytetradecanoateNot available
Average243.368Da
Monoisotopic243.1965683Da

Displaying 1–10 of 14 metabolites