Pseudomonas putida S16

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida S16 is a facultatively anaerobic, Gram-negative bacterium characterized by its rod shape and presence of flagella, which contribute to its mobility. This microorganism thrives in soil and wastewater environments, utilizing organic compounds as a heterotrophic energy source. It is categorized as free-living, indicating its independence from host organisms and its ability to survive in various ecological niches. With a mesophilic temperature range, P. putida S16 is well-suited to moderate environmental conditions, which are commonly found in natural and anthropogenic settings. The bacterium possesses a single replicon and features a double membrane structure, typical of Gram-negative organisms. Notably, P. putida S16 does not form spores, which suggests that it relies on other survival strategies in fluctuating environmental conditions. Pseudomonas putida is known for its metabolic versatility, allowing it to degrade a wide range of organic pollutants, making it significant in bioremediation efforts. Its inability to cause disease, combined with its ecological role in nutrient cycling and organic matter decomposition, underscores its importance in maintaining soil health and ecosystem functionality. As a free-living organism, P. putida S16 plays a vital role in the biogeochemical processes within its habitats, contributing to the overall biodiversity and stability of microbial communities in soil and wastewater environments. The accession number for this strain is NC_015733.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida S16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Pseudomonas putida S16


Gene Summary

Adenine Count

1130647 bp

Thymine Count

1124277 bp

Guanine Count

1862292 bp

Cytosine Count

1867574 bp

Genome Length

5984790 bp

Protein-coding Genes

5312 genes

Non-Coding Genes

224 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1353421 - 1353432Not Available
Peptidase m23PPS_RS06205Not AvailablePositive1358795 - 135965229888.6
Rna polymerase sigma factorPPS_RS06210Not AvailablePositive1359761 - 136076838191.7
ferredoxin fdxaPPS_RS06215Not AvailableNegative1361385 - 136170812036.1
Putative mismatch repair proteinPPS_RS06220Not AvailableNegative1361849 - 136442295162.8
Putative integrasePPS_RS06225Not AvailableNegative1364473 - 136545036633.8
duf4224 domain-containing proteinPPS_RS06230Not AvailableNegative1365463 - 13656577180.89
hypothetical proteinPPS_RS06235Not AvailableNegative1365696 - 136605513065.2
hypothetical proteinPPS_RS06240Not AvailableNegative1366232 - 13664207065.46
Hypothetical proteinPPS_RS06245Not AvailableNegative1366417 - 136681214102.7

Displaying genes 1 – 10 of 5536 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00047794-(6-hydroxypyridin-3-yl)-4-oxobutanoateC9H8NO4Chemical structure of 4-(6-hydroxypyridin-3-yl)-4-oxobutanoateNot available
Average194.167Da
Monoisotopic194.045881322Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da

Displaying 1–10 of 91 metabolites

Health Effects

No health effects information available for this bacterium.