Odoribacter splanchnicus DSM 20712

Gram-negativeNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Odoribacteraceae

Genus

Odoribacter

Description

Odoribacter splanchnicus DSM 20712 is a Gram-negative, non-motile bacterium classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. This species is anaerobic, thriving in environments devoid of oxygen, which is characteristic of its habitat associated with hosts. Odoribacter splanchnicus is mesophilic, meaning it flourishes within a moderate temperature range, suitable for many biological processes. In terms of its genetic composition, Odoribacter splanchnicus possesses a single replicon, which can be relevant for understanding its genomic stability and replication mechanisms. This bacterium is also classified as nonsporulating, indicating it does not form spores as a means of survival under adverse conditions. The ecological role of Odoribacter splanchnicus can be inferred from its free-living biotic relationship, suggesting it plays a role in the microbial community where it resides, possibly contributing to the degradation of organic matter or participating in symbiotic interactions with its host. The strain is cataloged under the accession number NC_015160.1, which can be used for further genomic studies and comparisons with related species. Overall, Odoribacter splanchnicus DSM 20712 exemplifies a specialized anaerobic organism that thrives in host-associated environments, underscoring the significance of such bacteria in maintaining microbial diversity and function within their ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyOdoribacteraceae
GenusOdoribacter
SpeciesOdoribacter splanchnicus
StrainDSM 20712

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Odoribacter splanchnicus DSM 20712, complete sequence.

Gene Summary

Adenine Count

1244368 bp

Thymine Count

1243488 bp

Guanine Count

940616 bp

Cytosine Count

963816 bp

Genome Length

4392288 bp

Protein-coding Genes

3633 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endonuclease/exonuclease/phosphatase family proteinODOSP_RS14340Not AvailableNegative3399315 - 340002827466.2
is1595-like element isodsp1 family transposaseODOSP_RS14345Not AvailableNegative3400019 - 340097537439.3
hypothetical proteinODOSP_RS14350Not AvailableNegative3401109 - 340148314471.9
rhomboid family intramembrane serine proteaseODOSP_RS14355Not AvailableNegative3401546 - 340249936645.0
rhomboid family intramembrane serine proteaseODOSP_RS14360Not AvailableNegative3402506 - 340332431506.1
regulatory iron-sulfur-containing complex subunit rictODOSP_RS14365P37541Negative3403324 - 340484457459.9
dna polymerase iii subunit deltaODOSP_RS14370Not AvailableNegative3404888 - 340600943742.6
aspartate--trna ligaseODOSP_RS14375B2RHE0Negative3406031 - 340777666671.4
cvpa family proteinODOSP_RS14380Not AvailablePositive3407937 - 340841618006.9
tyrosine--trna ligaseODOSP_RS14385Q5LJ19Positive3408438 - 340973048243.2

Displaying genes 2871 – 2880 of 3708 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

564 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 564 metabolites

Health Effects

No health effects information available for this bacterium.