Olsenella uli DSM 7084

Gram-positiveBacilliNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Coriobacteriia

Order

Coriobacteriales

Family

Atopobiaceae

Genus

Olsenella

Description

Olsenella species, particularly O.uli, are common members of the microbiota associated with primary endodontic infection, sometimes from blood of humans with local oral or gastrointestinal infections, and are also found in the bovine rumen. O.uli has been found to predominate over other Gram-positive rods in root canal samples taken after chemomechanical preparation and intracanal medication, suggesting that this species can resist intracanal disinfection measures and thus may be involved in persistent dental infections.Strain VPI D76D-27CT was isolated from either human gingival crevices or periodontal pockets. The bacteria are nonmotile, Gram-positive rods that occur singly, in pairs, and in short chains; the central part of the cell may swell particularly when grown on solid medium. This strain is microaerotolerant to anaerobic and grows optimally at 37 degrees Celsius. It does not grow on 6.5% w/v NaCl, and is able to ferment glucose, glycogen, trehalose and starch. Lactic acid is a major product of the strain VPI D76D-27CT, which is suspected to be important in inflammatory processes of endodontic infections (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1082860/sigs.1082860_pdf and PMID 20435744). (HAMAP: OLSUV)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassCoriobacteriia
OrderCoriobacteriales
FamilyAtopobiaceae
GenusOlsenella
SpeciesOlsenella uli
StrainDSM 7084

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Olsenella uli DSM 7084
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementChains- Pairs- Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Olsenella uli DSM 7084

Accession NumberNC_014363.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1768 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
para family proteinOLSU_RS00010Not Available+47 - 84729012.5
parb/repb/spo0j family partition proteinOLSU_RS00015Not Available+840 - 170932035.8
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnOLSU_RS00025Not Available-2069 - 314839662.4
d-alanine--d-alanine ligaseOLSU_RS00030Not Available+3261 - 425334824.4
helicase c-terminal domain-containing proteinOLSU_RS00035Not Available+4254 - 7259109148.0
wyl domain-containing proteinOLSU_RS00040Not Available-7282 - 823833897.6
helix-turn-helix transcriptional regulatorOLSU_RS00045Not Available-8228 - 922036578.2
m28 family peptidaseOLSU_RS00050Not Available+9388 - 13077129845.0
Trna-glyNot AvailableNot Available+13122 - 13196Not Available
aminopeptidaseOLSU_RS00060Not Available+13244 - 1452746696.8

Displaying genes 1 – 10 of 1823 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

230 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002197D-arabinoseC5H10O5Chemical structure of D-arabinoseNot available
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 230 metabolites