Hydrogenobacter thermophilus TK-6

Gram-negativerodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Aquificaceae

Genus

Hydrogenobacter

Description

Hydrogenobacter thermophilus TK-6 is a Gram-negative, rod-shaped bacterium that functions as a chemolithoautotroph, utilizing inorganic compounds for energy. This organism is strictly aerobic, requiring oxygen for its metabolic processes. It thrives at an optimal temperature of 45°C, embodying thermophilic characteristics, and is adapted to grow within a specific temperature range conducive to its survival. H. thermophilus TK-6 possesses a unique cellular structure, characterized by two membranes and a singular replicon, which is indicative of its evolutionary adaptations. Notably, the bacterium does not exhibit mobility, and while it has flagella, it does not form spores. This organism exists as a free-living species, indicating its capability to survive independently in its natural habitat. The ecological role of H. thermophilus TK-6 may be significant in thermophilic environments, particularly in geothermally heated ecosystems where it contributes to the recycling of nutrients through its metabolic processes. Its ability to utilize inorganic compounds for energy makes it an essential player in biogeochemical cycles, particularly in extreme environments where organic material is scarce. The lack of pathogenicity further suggests that it is a non-threatening organism, potentially beneficial to its ecosystem. The accessions for H. thermophilus TK-6, such as NC_013799.1, provide a genetic framework for further studies into its role and functions in thermophilic habitats.

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyAquificaceae
GenusHydrogenobacter
SpeciesHydrogenobacter thermophilus
StrainTK-6

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hydrogenobacter thermophilus TK-6
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature45
Temperature rangeThermophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceChemolithoautotroph
PathogenicityNo

Genome Summary

Hydrogenobacter thermophilus TK-6


Gene Summary

Adenine Count

484767 bp

Thymine Count

491384 bp

Guanine Count

381860 bp

Cytosine Count

385124 bp

Genome Length

1743135 bp

Protein-coding Genes

1908 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaHTH_RS00010Not AvailablePositive100 - 129946582.6
cellulose biosynthesis cyclic di-gmp-binding regulatory protein bcsbHTH_RS00015Not AvailablePositive1321 - 228935948.9
tigr01906 family membrane proteinHTH_RS00020Not AvailablePositive2291 - 292024421.6
sdr family oxidoreductaseHTH_RS00025Not AvailableNegative2897 - 356825003.4
Trna-valNot AvailableNot AvailablePositive3572 - 3647Not Available
Trna-leuNot AvailableNot AvailablePositive3705 - 3787Not Available
tigr00282 family metallophosphoesteraseHTH_RS00040Not AvailablePositive3799 - 460230069.2
ubix family flavin prenyltransferaseHTH_RS00045Not AvailablePositive4602 - 517121031.1
sodium:solute symporter family proteinHTH_RS00050Not AvailableNegative5168 - 654750238.2
pyridoxal phosphate-dependent aminotransferaseHTH_RS00055Not AvailableNegative6549 - 773043692.0

Displaying genes 1 – 10 of 1956 in total

Metabolites

862 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 862 metabolites

Health Effects

No health effects information available for this bacterium.