Hydrogenobacter thermophilus TK-6

Gram-negativerodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Aquificaceae

Genus

Hydrogenobacter

Description

Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) is a strictly thermophilic, obligate chemoautotrophic and hydrogen-oxidizing Gram-negative bacterium isolated from a hot spring located in Mine, Izu, Japan. Phylogenetic analysis based on the 16S ribosomal DNA sequence show that the strain is the deepest branching point among the Bacteria. In accordance with this, distinctive characteristics, such as unusual composition of cellular fatty acids (C18:0 and C20:1 as major fatty acids), a novel sulfur-containing quinone called methionaquinone and a characteristic carbon anabolism (via the reductive tricarboxylic acid cycle), have been reported. Moreover, it is able to assimilate ammonium using glutamine synthetase (GS). Its optimal growth temperature is around 70 to 75 degrees Celsius. (Adapted from: http://ijs.sgmjournals.org/cgi/reprint/34/1/5.pdf). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyAquificaceae
GenusHydrogenobacter
SpeciesHydrogenobacter thermophilus
StrainTK-6

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hydrogenobacter thermophilus TK-6
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature45
Temperature rangeThermophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceChemolithoautotroph
PathogenicityNo

Genome Summary

Hydrogenobacter thermophilus TK-6


Gene Summary

Adenine Count

484767 bp

Thymine Count

491384 bp

Guanine Count

381860 bp

Cytosine Count

385124 bp

Genome Length

1743135 bp

Protein-coding Genes

1908 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaHTH_RS00010Not Available+100 - 129946582.6
cellulose biosynthesis cyclic di-gmp-binding regulatory protein bcsbHTH_RS00015Not Available+1321 - 228935948.9
tigr01906 family membrane proteinHTH_RS00020Not Available+2291 - 292024421.6
sdr family oxidoreductaseHTH_RS00025Not Available-2897 - 356825003.4
Trna-valNot AvailableNot Available+3572 - 3647Not Available
Trna-leuNot AvailableNot Available+3705 - 3787Not Available
tigr00282 family metallophosphoesteraseHTH_RS00040Not Available+3799 - 460230069.2
ubix family flavin prenyltransferaseHTH_RS00045Not Available+4602 - 517121031.1
sodium:solute symporter family proteinHTH_RS00050Not Available-5168 - 654750238.2
pyridoxal phosphate-dependent aminotransferaseHTH_RS00055Not Available-6549 - 773043692.0

Displaying genes 1 – 10 of 1956 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

859 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 859 metabolites