Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | PHEP_RS04915 | Not Available | Positive | 1147774 - 1148538 | 29050.3 |
| cbs domain-containing protein | PHEP_RS04920 | Not Available | Positive | 1148538 - 1149200 | 24304.2 |
| nad kinase | PHEP_RS04925 | Not Available | Positive | 1149200 - 1150081 | 32915.7 |
| duf6089 family protein | PHEP_RS04930 | Not Available | Positive | 1150083 - 1150880 | 29737.0 |
| isoprenyl transferase | PHEP_RS04935 | Not Available | Positive | 1150900 - 1151640 | 28148.7 |
| outer membrane protein assembly factor bama | PHEP_RS04940 | Not Available | Positive | 1151704 - 1154271 | 95817.9 |
| omph family outer membrane protein | PHEP_RS04945 | Not Available | Positive | 1154316 - 1154846 | 20411.7 |
| omph family outer membrane protein | PHEP_RS04950 | Not Available | Positive | 1154890 - 1155450 | 20518.7 |
| glutamate racemase | PHEP_RS04955 | Not Available | Positive | 1155515 - 1156354 | 31291.4 |
| ferritin-like domain-containing protein | PHEP_RS04960 | Not Available | Positive | 1156479 - 1158379 | 71636.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
