Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase domain-containing protein | PHEP_RS04865 | Not Available | Positive | 1137572 - 1138630 | 38748.9 |
| hypothetical protein | PHEP_RS04870 | Not Available | Positive | 1138732 - 1139295 | 21235.5 |
| amino acid permease | PHEP_RS04875 | Not Available | Negative | 1139550 - 1141505 | 71920.1 |
| m3 family oligoendopeptidase | PHEP_RS04880 | Not Available | Negative | 1141517 - 1143232 | 66384.1 |
| ubia-like polyprenyltransferase | PHEP_RS04885 | Not Available | Negative | 1143238 - 1144104 | 32315.4 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | PHEP_RS04890 | Not Available | Negative | 1144101 - 1144706 | 22928.0 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | PHEP_RS04895 | Not Available | Positive | 1144759 - 1145490 | 27826.6 |
| outer membrane beta-barrel protein | PHEP_RS04900 | Not Available | Positive | 1145509 - 1146240 | 27783.2 |
| sdr family nad(p)-dependent oxidoreductase | PHEP_RS04905 | Not Available | Positive | 1146446 - 1147201 | 27407.2 |
| gatb/yqey domain-containing protein | PHEP_RS04910 | Not Available | Positive | 1147213 - 1147659 | 16246.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
