Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heparinase ii/iii domain-containing protein | PHEP_RS04815 | Not Available | Positive | 1124656 - 1126605 | 73436.2 |
| hypothetical protein | PHEP_RS04820 | Not Available | Positive | 1126645 - 1127877 | 43585.4 |
| hypothetical protein | PHEP_RS04825 | Not Available | Positive | 1127877 - 1130006 | 80998.0 |
| alpha-l-rhamnosidase n-terminal domain-containing protein | PHEP_RS04830 | Not Available | Positive | 1130010 - 1132322 | 87775.4 |
| l-rhamnose mutarotase | PHEP_RS04835 | Not Available | Positive | 1132333 - 1132647 | 12068.4 |
| fad-dependent oxidoreductase | PHEP_RS04840 | Not Available | Positive | 1132714 - 1134309 | 59256.5 |
| yccf domain-containing protein | PHEP_RS04845 | Not Available | Negative | 1134413 - 1134781 | 13607.4 |
| toxin-antitoxin system ywqk family antitoxin | PHEP_RS04850 | Not Available | Positive | 1134952 - 1136589 | 63028.1 |
| duf2059 domain-containing protein | PHEP_RS04855 | Not Available | Positive | 1136616 - 1137068 | 17138.9 |
| hypothetical protein | PHEP_RS04860 | Not Available | Positive | 1137159 - 1137509 | 13523.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
