Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formylglycine-generating enzyme family protein | PHEP_RS21425 | Not Available | Positive | 1041982 - 1042785 | 30116.7 |
| nad-dependent epimerase/dehydratase family protein | PHEP_RS04465 | Not Available | Negative | 1042940 - 1043773 | 30080.3 |
| helix-turn-helix domain-containing protein | PHEP_RS04470 | Not Available | Negative | 1043837 - 1044688 | 31994.7 |
| aaa domain-containing protein | PHEP_RS04475 | Not Available | Positive | 1045262 - 1048189 | 111919.0 |
| hypothetical protein | PHEP_RS04480 | Not Available | Negative | 1048240 - 1048485 | 9231.13 |
| giy-yig nuclease family protein | PHEP_RS04485 | Not Available | Negative | 1048577 - 1048876 | 11944.4 |
| hypothetical protein | PHEP_RS04490 | Not Available | Positive | 1049331 - 1049753 | 15882.3 |
| hypothetical protein | PHEP_RS04495 | Not Available | Negative | 1049792 - 1050256 | 18045.8 |
| rpn family recombination-promoting nuclease/putative transposase | PHEP_RS04500 | Not Available | Negative | 1050812 - 1051663 | 33154.8 |
| hypothetical protein | PHEP_RS04505 | Not Available | Positive | 1051913 - 1052203 | 11156.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
