Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | PHEP_RS04410 | Not Available | Positive | 1031289 - 1032794 | 56027.1 |
| exodeoxyribonuclease iii | PHEP_RS04415 | Not Available | Negative | 1032782 - 1033576 | 30555.6 |
| dihydrofolate reductase family protein | PHEP_RS04420 | Not Available | Negative | 1033599 - 1034150 | 20602.0 |
| thioredoxin-dependent thiol peroxidase | PHEP_RS04425 | Not Available | Negative | 1034373 - 1034831 | 16752.8 |
| m23 family metallopeptidase | PHEP_RS04430 | Not Available | Negative | 1034837 - 1036561 | 64005.2 |
| fumarylacetoacetate hydrolase family protein | PHEP_RS04435 | Not Available | Negative | 1036569 - 1037180 | 22855.5 |
| t9ss type a sorting domain-containing protein | PHEP_RS04440 | Not Available | Negative | 1037251 - 1037766 | 19099.5 |
| kup/hak/kt family potassium transporter | PHEP_RS04445 | Not Available | Positive | 1038039 - 1039991 | 72842.3 |
| pd-(d/e)xk nuclease family transposase | PHEP_RS04450 | Not Available | Negative | 1040101 - 1040652 | 21557.8 |
| rpn family recombination-promoting nuclease/putative transposase | PHEP_RS04455 | Not Available | Negative | 1040765 - 1041697 | 35844.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
