Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | PHEP_RS04310 | Not Available | Negative | 1010161 - 1011207 | 40537.1 |
| glycosyltransferase family 4 protein | PHEP_RS04315 | Not Available | Negative | 1011227 - 1012363 | 43194.7 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | PHEP_RS04320 | Not Available | Negative | 1012368 - 1013186 | 29570.2 |
| rna-binding s4 domain-containing protein | PHEP_RS04325 | Not Available | Positive | 1013261 - 1013659 | 15132.5 |
| nucleoside deaminase | PHEP_RS04330 | Not Available | Negative | 1013670 - 1014152 | 18111.9 |
| omph family outer membrane protein | PHEP_RS04335 | Not Available | Negative | 1014219 - 1014806 | 21502.5 |
| dna topoisomerase (atp-hydrolyzing) subunit b | PHEP_RS04340 | Not Available | Positive | 1015051 - 1017009 | 72506.4 |
| retropepsin-like aspartic protease | PHEP_RS04345 | Not Available | Negative | 1017063 - 1017488 | 15690.2 |
| malate dehydrogenase | PHEP_RS04350 | Not Available | Negative | 1017496 - 1018434 | 33089.2 |
| lipocalin family protein | PHEP_RS04355 | Not Available | Positive | 1018586 - 1019071 | 19049.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
