Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l1 | PHEP_RS04260 | Not Available | Positive | 996107 - 996805 | 24489.9 |
| 50s ribosomal protein l10 | PHEP_RS04265 | Not Available | Positive | 996808 - 997329 | 18709.7 |
| 50s ribosomal protein l7/l12 | PHEP_RS04270 | Not Available | Positive | 997392 - 997766 | 12821.5 |
| dna-directed rna polymerase subunit beta | PHEP_RS04275 | Not Available | Positive | 997921 - 1001724 | 142327.0 |
| dna-directed rna polymerase subunit beta' | PHEP_RS04280 | Not Available | Positive | 1001817 - 1006103 | 159804.0 |
| duf3467 domain-containing protein | PHEP_RS04285 | Not Available | Positive | 1006195 - 1006509 | 11621.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | PHEP_RS04290 | Not Available | Negative | 1006506 - 1007414 | 34329.3 |
| is1096 element passenger tnpr family protein | PHEP_RS04295 | Not Available | Negative | 1007423 - 1008073 | 25104.6 |
| cca trna nucleotidyltransferase | PHEP_RS04300 | Not Available | Negative | 1008131 - 1009537 | 53464.8 |
| l-threonylcarbamoyladenylate synthase | PHEP_RS04305 | Not Available | Negative | 1009564 - 1010130 | 20664.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
