Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid ii:glycine glycyltransferase femx | PHEP_RS04010 | Not Available | Negative | 948769 - 949890 | 43043.1 |
| thymidine kinase | PHEP_RS04015 | Not Available | Negative | 949947 - 950528 | 21272.6 |
| hypothetical protein | PHEP_RS04020 | Not Available | Positive | 950627 - 951610 | 37531.4 |
| rod shape-determining protein roda | PHEP_RS04025 | Not Available | Negative | 951603 - 952868 | 47058.2 |
| penicillin-binding protein 2 | PHEP_RS04030 | Not Available | Negative | 952865 - 954811 | 72361.4 |
| hypothetical protein | PHEP_RS04035 | Not Available | Negative | 954811 - 955326 | 19874.1 |
| rod shape-determining protein mrec | PHEP_RS04040 | Not Available | Negative | 955319 - 956155 | 30917.4 |
| rod shape-determining protein | PHEP_RS04045 | Not Available | Negative | 956201 - 957223 | 36757.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | PHEP_RS04050 | Not Available | Negative | 957311 - 958837 | 55678.5 |
| phosphoribosylglycinamide formyltransferase | PHEP_RS04055 | Not Available | Negative | 958877 - 959455 | 22023.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
