Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosaminidase domain-containing protein | PHEP_RS00355 | Not Available | Negative | 75842 - 76753 | 34562.1 |
| glucosaminidase domain-containing protein | PHEP_RS00360 | Not Available | Negative | 76753 - 77433 | 25567.4 |
| o-methyltransferase | PHEP_RS00365 | Not Available | Negative | 77436 - 78071 | 23954.9 |
| holliday junction resolvase ruvx | PHEP_RS00370 | Not Available | Negative | 78081 - 78497 | 15853.3 |
| atp-binding protein | PHEP_RS00375 | Not Available | Positive | 78603 - 79751 | 43461.2 |
| psp1 domain-containing protein | PHEP_RS00380 | Not Available | Positive | 79754 - 81145 | 51875.0 |
| gliding motility lipoprotein gldh | PHEP_RS00385 | Not Available | Positive | 81142 - 81612 | 18160.9 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | PHEP_RS00390 | Not Available | Negative | 81609 - 82910 | 47475.2 |
| m14 metallopeptidase family protein | PHEP_RS00395 | Not Available | Positive | 83029 - 85518 | 93549.8 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS00400 | Not Available | Positive | 85990 - 89112 | 113116.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
