Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylated-dna--[protein]-cysteine s-methyltransferase | PHEP_RS03910 | Not Available | Negative | 917913 - 918431 | 19085.1 |
| hypothetical protein | PHEP_RS03915 | Not Available | Positive | 918596 - 919240 | 22807.4 |
| two-component regulator propeller domain-containing protein | PHEP_RS03920 | Not Available | Positive | 919384 - 923508 | 155479.0 |
| chondroitinase family polysaccharide lyase | PHEP_RS03925 | Not Available | Positive | 923574 - 926666 | 116400.0 |
| sulfatase | PHEP_RS03930 | Not Available | Positive | 926663 - 928081 | 52418.8 |
| chondroitinase-ac | PHEP_RS03935 | Not Available | Positive | 928098 - 930200 | 79698.1 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS03940 | Not Available | Positive | 930334 - 933450 | 114400.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS03945 | Not Available | Positive | 933469 - 935280 | 65863.2 |
| chondroitinase-b | PHEP_RS03950 | Not Available | Positive | 935300 - 936820 | 56339.6 |
| glycoside hydrolase family 88 protein | PHEP_RS03955 | Not Available | Positive | 936865 - 938136 | 48177.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
