Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS03860 | Not Available | Positive | 903311 - 905086 | 67098.5 |
| t9ss type a sorting domain-containing protein | PHEP_RS03865 | Not Available | Positive | 905076 - 908147 | 110320.0 |
| duf1800 domain-containing protein | PHEP_RS03870 | Not Available | Positive | 908197 - 910128 | 70761.3 |
| glucosamine-6-phosphate deaminase | PHEP_RS03875 | Not Available | Negative | 910177 - 910914 | 27143.2 |
| gfo/idh/moca family protein | PHEP_RS03880 | Not Available | Negative | 910956 - 912380 | 53164.1 |
| sugar mfs transporter | PHEP_RS03885 | Not Available | Positive | 912581 - 913906 | 48158.6 |
| gfo/idh/moca family protein | PHEP_RS03890 | Not Available | Positive | 913920 - 915140 | 45238.4 |
| n-acetylglucosamine-6-phosphate deacetylase | PHEP_RS03895 | Not Available | Positive | 915148 - 916335 | 43227.1 |
| laci family dna-binding transcriptional regulator | PHEP_RS03900 | Not Available | Negative | 916332 - 917360 | 38017.5 |
| hypothetical protein | PHEP_RS03905 | Not Available | Negative | 917613 - 917882 | 10498.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
