Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | PHEP_RS03610 | Not Available | Negative | 836061 - 836903 | 31770.4 |
| rna polymerase sigma factor | PHEP_RS03615 | Not Available | Positive | 837162 - 837749 | 23069.2 |
| fecr family protein | PHEP_RS03620 | Not Available | Positive | 837825 - 839000 | 43619.1 |
| tonb-dependent receptor | PHEP_RS03625 | Not Available | Positive | 839187 - 842555 | 121637.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS03630 | Not Available | Positive | 842574 - 843920 | 49976.0 |
| zinc-dependent metalloprotease | PHEP_RS03635 | Not Available | Positive | 843968 - 846556 | 97239.5 |
| hypothetical protein | PHEP_RS03640 | Not Available | Negative | 846855 - 849170 | 89495.3 |
| hypothetical protein | PHEP_RS03645 | Not Available | Negative | 849100 - 850143 | 39358.7 |
| hpp family protein | PHEP_RS03650 | Not Available | Positive | 850262 - 850846 | 21240.8 |
| thua domain-containing protein | PHEP_RS03655 | Not Available | Negative | 850855 - 851592 | 27618.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
