Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aquaporin z | PHEP_RS03510 | Not Available | Negative | 810192 - 810884 | 23472.0 |
| abc transporter permease | PHEP_RS03515 | Not Available | Negative | 811046 - 812137 | 39732.4 |
| abc transporter atp-binding protein | PHEP_RS03520 | Not Available | Negative | 812144 - 812914 | 28808.7 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | PHEP_RS03525 | Not Available | Negative | 813012 - 814124 | 40885.6 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | PHEP_RS03530 | Not Available | Positive | 814377 - 815192 | 29169.3 |
| rlua family pseudouridine synthase | PHEP_RS03535 | Not Available | Positive | 815192 - 815878 | 25988.6 |
| rna polymerase sigma factor | PHEP_RS03540 | Not Available | Positive | 816223 - 816849 | 24233.5 |
| fecr family protein | PHEP_RS03545 | Not Available | Positive | 816956 - 818152 | 44861.7 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS03550 | Not Available | Positive | 818344 - 821808 | 128635.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS03555 | Not Available | Positive | 821821 - 823749 | 73410.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
