Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | PHEP_RS03310 | Not Available | Positive | 770604 - 772055 | 53857.9 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS03315 | Not Available | Positive | 772092 - 773453 | 48741.2 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | PHEP_RS03320 | Not Available | Positive | 773529 - 774527 | 37153.1 |
| hypothetical protein | PHEP_RS03325 | Not Available | Positive | 774574 - 774927 | 12632.6 |
| dead/deah box helicase | PHEP_RS03330 | Not Available | Negative | 774985 - 776862 | 69082.7 |
| duf4293 domain-containing protein | PHEP_RS03335 | Not Available | Negative | 776947 - 777411 | 17020.6 |
| trna pseudouridine(38-40) synthase trua | PHEP_RS03340 | Not Available | Positive | 777501 - 778286 | 29640.2 |
| abc transporter atp-binding protein | PHEP_RS03345 | Not Available | Positive | 778288 - 780054 | 66294.4 |
| duf4180 domain-containing protein | PHEP_RS03350 | Not Available | Negative | 780061 - 780420 | 13490.3 |
| l,d-transpeptidase family protein | PHEP_RS03355 | Not Available | Positive | 780554 - 781996 | 54477.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
