Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone htpg | PHEP_RS00255 | Not Available | Positive | 52042 - 53931 | 71190.8 |
| nucleoside triphosphate pyrophosphohydrolase family protein | PHEP_RS00260 | Not Available | Negative | 53993 - 54457 | 17639.8 |
| duf4397 domain-containing protein | PHEP_RS00265 | Not Available | Positive | 54692 - 55399 | 25982.3 |
| rna polymerase sigma factor | PHEP_RS00270 | Not Available | Positive | 55508 - 56095 | 22908.8 |
| outer membrane beta-barrel protein | PHEP_RS00275 | Not Available | Positive | 56092 - 57375 | 46523.5 |
| m16 family metallopeptidase | PHEP_RS00280 | Not Available | Negative | 57372 - 60188 | 105206.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS00285 | Not Available | Negative | 60198 - 61661 | 54174.1 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS00290 | Not Available | Negative | 61672 - 65229 | 130590.0 |
| fecr family protein | PHEP_RS21390 | Not Available | Negative | 65273 - 66277 | 37959.7 |
| rna polymerase sigma factor | PHEP_RS00300 | Not Available | Negative | 66369 - 66971 | 23574.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
