Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold-shock protein | PHEP_RS02655 | Not Available | Positive | 639097 - 639288 | 6865.04 |
| sir2 family nad-dependent protein deacetylase | PHEP_RS02660 | Not Available | Negative | 639341 - 640024 | 25034.1 |
| hypothetical protein | PHEP_RS02665 | Not Available | Negative | 640053 - 640295 | 9501.78 |
| tetratricopeptide repeat protein | PHEP_RS02670 | Not Available | Negative | 640422 - 641093 | 24706.3 |
| dna replication/repair protein recf | PHEP_RS02675 | Not Available | Positive | 641253 - 642356 | 42710.6 |
| duf721 domain-containing protein | PHEP_RS02680 | Not Available | Positive | 642349 - 642639 | 10878.6 |
| hypothetical protein | PHEP_RS22140 | Not Available | Negative | 642647 - 642820 | 6282.22 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | PHEP_RS02690 | Not Available | Negative | 642871 - 643623 | 27121.7 |
| nucleoside-diphosphate kinase | PHEP_RS02695 | Not Available | Negative | 643729 - 644148 | 15185.9 |
| dhh family phosphoesterase | PHEP_RS02700 | Not Available | Positive | 644300 - 645310 | 37819.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
