Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialidase | PHEP_RS02505 | Not Available | Positive | 597443 - 598696 | 47604.5 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS02510 | Not Available | Positive | 599429 - 602689 | 121228.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS02515 | Not Available | Positive | 602703 - 604709 | 76091.4 |
| duf4959 domain-containing protein | PHEP_RS02520 | Not Available | Positive | 604706 - 606001 | 48634.2 |
| duf4998 domain-containing protein | PHEP_RS02525 | Not Available | Positive | 606024 - 607460 | 53122.1 |
| hybrid sensor histidine kinase/response regulator transcription factor | PHEP_RS02530 | Not Available | Negative | 607617 - 611621 | 152017.0 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | PHEP_RS02535 | Not Available | Positive | 612151 - 613239 | 42073.8 |
| glycoside hydrolase family 43 protein | PHEP_RS02540 | Not Available | Positive | 613276 - 614289 | 37447.5 |
| 2fe-2s iron-sulfur cluster-binding protein | PHEP_RS02545 | Not Available | Positive | 614368 - 615420 | 39498.6 |
| excinuclease abc subunit uvra | PHEP_RS02550 | Not Available | Positive | 615524 - 618367 | 105992.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
