Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompp1/fadl family transporter | PHEP_RS02350 | Not Available | Positive | 558879 - 560084 | 43315.5 |
| sgnh/gdsl hydrolase family protein | PHEP_RS02355 | Not Available | Positive | 560103 - 561389 | 45017.9 |
| polysaccharide lyase | PHEP_RS02360 | Not Available | Negative | 561445 - 562599 | 43833.9 |
| hybrid sensor histidine kinase/response regulator | PHEP_RS02370 | Not Available | Positive | 562926 - 565085 | 81872.0 |
| tonb-dependent receptor | PHEP_RS02375 | Not Available | Negative | 565163 - 567742 | 93192.9 |
| 4a-hydroxytetrahydrobiopterin dehydratase | PHEP_RS02380 | Not Available | Negative | 568086 - 568352 | 10791.0 |
| peptide-methionine (s)-s-oxide reductase msra | PHEP_RS02385 | Not Available | Negative | 568455 - 569054 | 22664.1 |
| isopenicillin n synthase family dioxygenase | PHEP_RS02390 | Not Available | Positive | 569304 - 570266 | 36329.9 |
| abc transporter atp-binding protein | PHEP_RS02395 | Not Available | Positive | 570270 - 572105 | 69299.3 |
| serine hydrolase domain-containing protein | PHEP_RS02400 | Not Available | Negative | 572115 - 573926 | 66764.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
