Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diacylglycerol kinase family protein | PHEP_RS02305 | Not Available | Negative | 546668 - 547027 | 12915.1 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | PHEP_RS02310 | Not Available | Positive | 547123 - 548067 | 34806.9 |
| duf2130 domain-containing protein | PHEP_RS02315 | Not Available | Negative | 548064 - 549350 | 50203.1 |
| metal-dependent transcriptional regulator | PHEP_RS02320 | Not Available | Negative | 549402 - 550064 | 25209.6 |
| tonb-dependent receptor | PHEP_RS02325 | Not Available | Positive | 550187 - 552433 | 84471.1 |
| putative sensor domain dacnv-containing protein | PHEP_RS02330 | Not Available | Positive | 552470 - 553612 | 41651.3 |
| hypothetical protein | PHEP_RS22135 | Not Available | Negative | 553616 - 553774 | 6064.82 |
| padr family transcriptional regulator | PHEP_RS02335 | Not Available | Positive | 554009 - 554365 | 13410.3 |
| pspc domain-containing protein | PHEP_RS02340 | Not Available | Positive | 554373 - 555920 | 58920.4 |
| hypothetical protein | PHEP_RS02345 | Not Available | Negative | 555921 - 558647 | 101039.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
