Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | PHEP_RS02205 | Not Available | Negative | 523581 - 524753 | 44134.5 |
| rna polymerase sigma-70 factor | PHEP_RS02210 | Not Available | Negative | 524823 - 525371 | 20897.2 |
| duf6266 family protein | PHEP_RS02215 | Not Available | Positive | 525676 - 526350 | 24782.1 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS02220 | Not Available | Positive | 526674 - 529805 | 116053.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS02225 | Not Available | Positive | 529818 - 531410 | 58814.8 |
| fasciclin domain-containing protein | PHEP_RS02230 | Not Available | Positive | 531465 - 532166 | 26538.3 |
| hypothetical protein | PHEP_RS02235 | Not Available | Positive | 532169 - 533254 | 40255.8 |
| glycoside hydrolase family 88/105 protein | PHEP_RS02240 | Not Available | Negative | 533339 - 534571 | 46173.1 |
| c-type cytochrome | PHEP_RS02245 | Not Available | Negative | 534571 - 535020 | 16043.8 |
| pqq-dependent sugar dehydrogenase | PHEP_RS02250 | Not Available | Negative | 535027 - 536310 | 47317.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
