Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formimidoylglutamase | PHEP_RS21310 | Not Available | Positive | 5151146 - 5152117 | 34821.6 |
| ompa family protein | PHEP_RS21315 | Not Available | Negative | 5152255 - 5153961 | 62099.1 |
| 5-formyltetrahydrofolate cyclo-ligase | PHEP_RS21320 | Not Available | Negative | 5154066 - 5154626 | 21283.8 |
| elongation factor p | PHEP_RS21325 | Not Available | Negative | 5154922 - 5155482 | 21348.5 |
| abc transporter atp-binding protein | PHEP_RS21330 | Not Available | Negative | 5155639 - 5156253 | 22729.3 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | PHEP_RS21335 | Not Available | Negative | 5156267 - 5157052 | 28503.4 |
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | PHEP_RS21340 | Not Available | Negative | 5157049 - 5158458 | 51926.3 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | PHEP_RS21345 | Not Available | Negative | 5158461 - 5159534 | 38296.4 |
| hd domain-containing protein | PHEP_RS21350 | Not Available | Negative | 5159654 - 5160877 | 46848.0 |
| bifunctional response regulator/alkaline phosphatase family protein | PHEP_RS21355 | Not Available | Positive | 5160981 - 5162534 | 60388.4 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
