Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoenolpyruvate carboxylase | PHEP_RS21260 | Not Available | Positive | 5140784 - 5143372 | 98469.9 |
| duf6952 family protein | PHEP_RS21265 | Not Available | Negative | 5143448 - 5143696 | 9041.8 |
| thioredoxin family protein | PHEP_RS21270 | Not Available | Negative | 5143693 - 5144004 | 11585.9 |
| peroxiredoxin | PHEP_RS21275 | Not Available | Negative | 5144020 - 5144652 | 23441.5 |
| hypothetical protein | PHEP_RS21280 | Not Available | Negative | 5144779 - 5145987 | 43951.4 |
| aldehyde dehydrogenase family protein | PHEP_RS21285 | Not Available | Positive | 5146032 - 5147444 | 52116.4 |
| 4,5-dopa dioxygenase extradiol | PHEP_RS21290 | Not Available | Negative | 5147446 - 5148273 | 30472.7 |
| peptidylprolyl isomerase | PHEP_RS21295 | Not Available | Positive | 5148392 - 5149123 | 27355.1 |
| exodeoxyribonuclease iii | PHEP_RS21300 | Not Available | Positive | 5149128 - 5149898 | 29536.3 |
| imidazolonepropionase | PHEP_RS21305 | Not Available | Positive | 5149902 - 5151146 | 44420.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
