Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate--trna ligase | PHEP_RS21110 | Not Available | Positive | 5109621 - 5111366 | 65999.3 |
| hypothetical protein | PHEP_RS21115 | Not Available | Negative | 5111419 - 5111871 | 16919.6 |
| phage holin family protein | PHEP_RS21120 | Not Available | Negative | 5111846 - 5112232 | 14887.1 |
| ytxh domain-containing protein | PHEP_RS21125 | Not Available | Negative | 5112255 - 5112524 | 9583.28 |
| ai-2e family transporter | PHEP_RS21130 | Not Available | Negative | 5112577 - 5113629 | 39171.4 |
| sigma-54-dependent transcriptional regulator | PHEP_RS21135 | Not Available | Negative | 5113643 - 5115046 | 52657.3 |
| enoyl-coa hydratase/isomerase family protein | PHEP_RS21140 | Not Available | Negative | 5115208 - 5115990 | 27845.6 |
| cobalamin b12-binding domain-containing protein | PHEP_RS21145 | Not Available | Negative | 5115994 - 5116413 | 15136.7 |
| glutamine--trna ligase/yqey domain fusion protein | PHEP_RS21150 | Not Available | Positive | 5116495 - 5118156 | 64022.9 |
| n-acetylmuramoyl-l-alanine amidase | PHEP_RS21155 | Not Available | Negative | 5118186 - 5119016 | 31060.4 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
