Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS20465 | Not Available | Negative | 4953025 - 4954680 | 62165.7 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS20470 | Not Available | Negative | 4954698 - 4957844 | 115138.0 |
| glycoside hydrolase domain-containing protein | PHEP_RS20475 | Not Available | Positive | 4958196 - 4960901 | 102592.0 |
| right-handed parallel beta-helix repeat-containing protein | PHEP_RS20480 | Not Available | Positive | 4960922 - 4963087 | 81398.5 |
| carbohydrate-binding family 9-like protein | PHEP_RS20485 | Not Available | Positive | 4963084 - 4963722 | 24171.7 |
| class i sam-dependent methyltransferase | PHEP_RS20490 | Not Available | Positive | 4963766 - 4964674 | 35161.3 |
| substrate-binding domain-containing protein | PHEP_RS20495 | Not Available | Negative | 4964686 - 4965762 | 41488.9 |
| duf5107 domain-containing protein | PHEP_RS20500 | Not Available | Positive | 4966158 - 4969298 | 121289.0 |
| phytanoyl-coa dioxygenase family protein | PHEP_RS20505 | Not Available | Positive | 4969328 - 4970230 | 34582.9 |
| sugar phosphate isomerase/epimerase family protein | PHEP_RS20510 | Not Available | Positive | 4970234 - 4971052 | 31295.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
